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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgaatacatcttataataactcactaagctacagcattttattgattattaagtgtatacatacttacattttcgtacatggtttgtatatggacagGCTGGTACTCTTATCTGTGGTTGCCATTTGCTCCTTTGATT

Basic information

species Glycine max
transcript GLYMA13G40300.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G40300.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 9
gtaagcgaatacatcttataataactcactaagctacagcattttattgattattaagtgtatacatacttacattttcgtacatggtttg----tatatggacagGCTGGTACTCTTATCTGTGGTTGCCATTTGCTCCTTTGATT
|| || |   || |   |  ||  || |  |   |     |||| |   |  | |||   |  |   | || | |||  |||     |||     ||| ||||||||||||||||||||||| ||| |||||||    ||  |||||
gtgagtgtg-acttgcaaatatttctaataacatttttatatttgaaaaaaaaataaaaattgattgaatttc-tttgagtaagctttttaactttatgtggacagGCTGGTACTCTTATCTATGGCTGCCATTCATCCCACTGATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattattaagtgtatacatacttacattttcgtacatggtttgtatatggacagGCTGGTACTCTTATCTGTGGTTGCCATTTGCTCCTTTGATT
                   tacttac  putative branch site (score: 1)
                      ttacatttt  TA-rich tract