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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctctctatatatatatatatatatatatatgaaaggcaaaaggagtcttttcctatatatatctggcactcaaactcatcacttgcgattctcaatgcagCTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACAATAATATTGATACTAATTTCTTGGTCGTGAAGTATGAAATCCTGCTACA

Basic information

species Glycine max
transcript GLYMA13G38690.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023225|gb|CX709966.1|CX709966
EST:     CAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAG                         CTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
genomic: CAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAGgtagatactc ... ctcaatgcagCTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
EST: gi|254345717|gb|GR859364.1|GR859364
EST:     CAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAG                         CTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
genomic: CAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAGgtagatactc ... ctcaatgcagCTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
EST: gi|58020255|gb|CX706997.1|CX706997
EST:     CAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAG                         CTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
genomic: CAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAGgtagatactc ... ctcaatgcagCTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
EST: gi|58020043|gb|CX706785.1|CX706785
EST:     CAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAG                         CTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
genomic: CAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAGgtagatactc ... ctcaatgcagCTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
EST: gi|31461524|gb|CD403552.1|CD403552
EST:     CAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAG                         CTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
genomic: CAAACGCAAGTACTCGATTGAGCGATTGCCTGAAGCAACAATTGGTGGAGgtagatactc ... ctcaatgcagCTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
EST: gi|51337561|gb|CO981427.1|CO981427
EST:     GCAACAATTGGTGGAG                         CTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA
genomic: GCAACAATTGGTGGAGgtagatactc ... ctcaatgcagCTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttcctatatatatctggcactcaaactcatcacttgcgattctcaatgcagCTCCAAGAATTTGATGCAGTAAAACTAAAACAGGCAGAGCTGGCTATAACAATAATATTGATACTAATTTCTTGGTCGTGAAGTATGAAATCCTGCTACA
                                           ttctc  CT-rich tract
 tatatatatct  TA-rich tract