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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatataattttatctactttcagacaattggtttttctgatgattaaaatgtaattagcatgaaatgatgaaaacattcctggacattctaacacatcaaaattctgtgtagATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTTTTGCAATACTCCCCAAGTCTCCGATGCACTGCG

Basic information

species Glycine max
transcript GLYMA13G30060.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G30060.2 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os01g10840.1 (Oryza sativa), 3'ss of exon 9
---------------------------------gtatataattttatctac------tttcagacaattggtttttctgatgattaaaatgtaattagcatgaaatgatgaaaacattcctgga-cattctaacacatcaaaattctgtgt--------------agATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTTTTGCAATACTCCCCAAGTCTCCGATGCACTGCG
                                   |||  ||||||  | |      ||  || | | |       |   |   |  |   |  |||   |||||| |  ||||  |  ||| | |    ||||  ||| |  |  |||                |||| |||||||| |  |||||||||||||| || || ||||| ||||| ||| | ||||| || |||||||| || |||||||| 
gtagccatgttttcttatattggatcaccttcctcataccattttacttgcagggcattgtaggccactt-caaaaccagtttctgcatcatgtttaatttgaaataaaaaaaatgtatctgcagctgcttaactgatccatctgttgttctttcgcttaccaccagATTTTCCACAAGAGAATGCCTCCAGAAGCCATAGACCTTGCTTCCCGTCTTCTCCAATATTCACCAAGTCTACGCTGCACTGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatgaaatgatgaaaacattcctggacattctaacacatcaaaattctgtgtagATATTCCACAAAAAGATGCCTCCAGAAGCAATTGATCTTGCATCCCGGCTTTTGCAATACTCCCCAAGTCTCCGATGCACTGCG
                             ttctaac  putative branch site (score: 1)
                                      atcaaaatt  TA-rich tract