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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactctacatacattaagagagatactgcagacgttctttttaggttgatgaataaaatctgagatcatttcctgttgtaaaaatattttgtttccagGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAG

Basic information

species Glycine max
transcript GLYMA13G28720.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28720.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 3'ss of exon 9
gtaaactctacatacattaagagagatactgcagacgttc--tttttaggttgatgaataaaatctgagatcatttcctgttgtaaaaatattttgtttccagGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAG
|||| |||| | | |  |||      |     |  | ||   ||||  |||| || ||  |      |    || || | |||||   ||||        ||||||| |||||||||||||||||| ||||||| ||  | |||||||| ||||||||||| || ||||||||||||
gtaagctctgccttctctaaatatattgagttaagcattgggttttatggttaatcaaagacgatcaaccctatctctt-ttgtacttatatgg------cagGTAAGATGGTTCTTTTGGATAAGCTACTTCCAAAGCTAAAAGAGCGTGATTCTAGGGTTCTAATATTTTCACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254345542|gb|GR851704.1|GR851704
EST:     TGAACCTGGTCCTCCCTTCACTACAGGAGATCATCTAATTGAAAATGCTG                         GTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATT
genomic: TGAACCTGGTCCTCCCTTCACTACAGGAGATCATCTAATTGAAAATGCTGgtaaactcta ... ttgtttccagGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATT
EST: gi|208167495|gb|GD965147.1|GD965147
EST:     TGAACCTGGTCCTCCCTTCACTACAGGAGATCATCTAATTGAAAATGCTG                         GTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATT
genomic: TGAACCTGGTCCTCCCTTCACTACAGGAGATCATCTAATTGAAAATGCTGgtaaactcta ... ttgtttccagGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATT
EST: gi|208061261|gb|GD859199.1|GD859199
EST:     TGAACCTGGTCCTCCCTTCACTACAGGAGATCATCTAATTGAAAATGCTG                         GTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCG
genomic: TGAACCTGGTCCTCCCTTCACTACAGGAGATCATCTAATTGAAAATGCTGgtaaactcta ... ttgtttccagGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttgatgaataaaatctgagatcatttcctgttgtaaaaatattttgtttccagGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAG
 ggttgat  putative branch site (score: 5)
                                           ttttgtttcc  putative PPT
                              tgttgtaaaaatattt  TA-rich tract