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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcattgcactttggttcacttaccaattgatggcgtatgcatatttgaagtaacttttttattgactctgctgttacatttgtttgaaaaattgctttctaatatttttttcttttctccattttgtcaatgcatcagGTTGGATTCGGGGAAGAGATTCATCTCGGGTATTGCATTATGAAGGAGGTGGATCCAGGACTCCGTGCACTGATATTGTGTGTCCTATGTATATGCGTGT

Basic information

species Glycine max
transcript GLYMA13G26700.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G26700.1 (Glycine max), 3'ss of exon 9
lower sequence: GRMZM2G032496_T01 (Zea mays), 3'ss of exon 2
gtaggcattgcactttggttcacttaccaattgatggcgtatgcatatttgaagtaacttttttattgactctgctgttacatttgtttgaaaaattgctttctaatatttttttcttttctccattt-tgtcaatgcatcagGTTGGATTCGGGGAAGAGATTCATCTCGGGTATTGCATTATGAAGGAGGTGGATCCAGGACTCCGTGCACTGATATTGTGTGTCCTATGTATATGCGTGT
                                                                            || | || |  ||   |  |  |  | |||| | | |   | |  || | |  |  || |     |||||||||||| | ||| ||| || |  |  |  | |||||||| |||||||| ||||| ||  | | ||| ||||||||||| || ||||||||||||||
----------------------------------------------------------------------------gtaaaatattctt---acctgtcagtttaatttctgtacttctcatctaatggtaacattcttctagGTTGGATTCGTGAAAGGGATCCAACAAGACTCCTCCATTATGAGGGAGGTGGTTCCAGAACATCATCCACAGATATTGTGTGCCCCATGTATATGCGTGT

upper sequence: GLYMA13G26700.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 9
gtaggcattgcactttggttcacttaccaattgatggcgtatgcatatttgaagtaacttttttattgactctgctgttacatttgtttgaaaaattgctttctaatatttttttcttttctccattttgtcaatgcatcagGTTGGATTCGGGGAAGAGATTCATCTCGGGTATTGCATTATGAAGGAGGTGGATCCAGGACTCCGTGCACTGATATTGTGTGTCCTATGTATATGCGTGT
                                      |    |   | || |   |     |  |||| | ||||   | ||   |       |||  || | | |   || ||  |||       |    ||    |||||||||||| | ||||| || || ||| || |||| ||||| ||||| |||||| | |||||||| |  || |||||||| || || ||||||||||||||
-----------------------------------tatgatcactactctgtaaacatccaatgcttgaatttgcttccatatacatccc---cattatttgccagttacttattagttt----gaatgactaaaatttcagGTTGGATTAGAGGAAGGGACTCCTCTAGGCTATTACATTACGAAGGGGGTGGAGCTAGGACTCCATCAACAGATATTGTCTGCCCCATGTATATGCGTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaaaaattgctttctaatatttttttcttttctccattttgtcaatgcatcagGTTGGATTCGGGGAAGAGATTCATCTCGGGTATTGCATTATGAAGGAGGTGGATCCAGGACTCCGTGCACTGATATTGTGTGTCCTATGTATATGCGTGT
             ttctaat  putative branch site (score: 2)
                   tatttttttcttttct  CT-rich tract
     aaattgctttctaata  TA-rich tract