Sequence
atgc intronic sequence ATGC exonic sequencegtgagttttgttcttccacttaatctctacttcggtcctttattgaggattttataactttttccctttgcattgacttcaaaatattgaatggttatggcagGAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAG
Basic information
species | Glycine max |
transcript | GLYMA13G23230.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA13G23230.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G20350.1 (Arabidopsis thaliana), 3'ss of exon 8
-------------------gtgagttttgttcttccacttaatctctacttcggtcctttattgaggatttta--taactttttccctttgcattgacttcaaaatattgaatggttatggcagGAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAG
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gttagtagcttattgattctcaagtttaacttacataattg-tccatattatatccggttcggtatgattttgagtactattttcttgttcaagtgtctgactggttttcttacccctttacagGAACCACTCTTAAAAATAGAGCTAAACAATCCTGCTTTGCTTGCTGGGAATTGGACACAGCTCTGTGCAACATGCAAG
upper sequence: GLYMA13G23230.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 8
--gtgagttttgttcttccacttaatctctacttcggtcctttattgaggattttataactttttccctttgcattgacttcaaaatattgaatggttatggcagGAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAG
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gatcaagttttcggagtttcttttttccttaccaattaattttgtaaataatgtgttca--tttatgtttttaagtgtgtctaatctattat---gttttaatagGAACCTCTACTGAAGATTGAGATAAACAATCCTGCCTTGCTAGCTGGGAATTGGTCTCAGCTATGTGCTACATGCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15814634|gb|BI786909.1|BI786909EST: ATCAGAATGAATATGCATGACACTCAGGATACAAAAGATGAT GAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAAC
genomic: ATCAGAATGAATATGCATGACACTCAGGATACAAAAGATGATgtgagttttg ... gttatggcagGAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttataactttttccctttgcattgacttcaaaatattgaatggttatggcagGAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAG
ttcaaaatattgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagttttgttcttccacttaatctctacttcggtcctttattgaggattttataactttttccctttgcattgacttcaaaatattgaatggttatggcagGAGCCTCTATTGAAGATTGAGATAAATAATCCTGCTTTGCTAGCTGGAAACTGGTCCCAGCTTTGTGCAACATGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA