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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtccacaatatacaaaccatacattctaatgcttaattatttcaggacttttatctccaaattatagatcagcatgcatgataatgtagccattatctgctggaacagaattttaaatttgaaatacttgtttcttttagGGGTCTCCTTTCTGCAAACTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCTGGTAAAACCCATGTTTGTGAGCAACCAACTGTT

Basic information

species Glycine max
transcript GLYMA13G22160.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13788748|gb|BG651339.1|BG651339
EST:     CAGCGAAGTTCCCTCCAAAGCCACTTAAATTATGGGCATATGAG                         GGGTCTCCTTTCTGCAAACTTGTACGTGAAGTACTTGTGGAATTGGAGCTG
genomic: CAGCGAAGTTCCCTCCAAAGCCACTTAAATTATGGGCATATGGGgttggtccac ... tttcttttagGGGTCTCCTTTCTGCAAACTTGTACGTGAAGTACTTGTGGAATTGGAGCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtagccattatctgctggaacagaattttaaatttgaaatacttgtttcttttagGGGTCTCCTTTCTGCAAACTTGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACACTTGCTTGTCTGGTAAAACCCATGTTTGTGAGCAACCAACTGTT
                                       tacttgtttctttt  CT-rich tract
 aattttaaatttgaaa  TA-rich tract