1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtataataaagtattgctattattggtttcattaatcagataacaataacattcattaattcactttttagatgatatatctaagtgcttacctatctatatttgttgtctttgtgatgaatatcgttagGATTCATCACATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGGCTGCTATGATATTATGTTCGGGAAAAACCGCTACTACATATTCCTATAC
species | Glycine max |
transcript | GLYMA13G21440.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGGATTGTCACTCAAAAGGGTAAACCACCCAAGAGTCGGTTTAGGATAAG GATTCATCACATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGGEST: gi|51334741|gb|CO978607.1|CO978607
genomic: TGGATTGTCACTCAAAAGGGTAAACCACCCAAGAGTCGGTTTAGGATAAGgtataataaa ... atatcgttagGATTCATCACATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGG
EST: TGGATTGTCACTCAAAAGGGTAAACCACCCAAGAGTCGGTTTAGGATAAG GATTCATCACATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGG
genomic: TGGATTGTCACTCAAAAGGGTAAACCACCCAAGAGTCGGTTTAGGATAAGgtataataaa ... atatcgttagGATTCATCACATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGG
tatatctaagtgcttacctatctatatttgttgtctttgtgatgaatatcgttagGATTCATCACATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGGCTGCTATGATATTATGTTCGGGAAAAACCGCTACTACATATTCCTATAC
tgcttac putative branch site (score: 2)
tatctatatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataataaagtattgctattattggtttcattaatcagataacaataacattcattaattcactttttagatgatatatctaagtgcttacctatctatatttgttgtctttgtgatgaatatcgttagGATTCATCACATGTTGGAACTTCTTGTTGGATTCTACCTCTTCTTCTGTGGCTGCTATGATATTATGTTCGGGAAAAACCGCTACTACATATTCCTATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT