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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaagttttagaaagtttaactttttattctatgaatctaactaaggataaatcatgatgagctttgttatatatacagGAAGCATCCTGGGTGCTGTCTAATATAGCTGCTGGTTCTGTTGAGCACAAGCAGTTGATATATTCTAGTGAGGCAGTGCCTGTGCTATTGCGCCTTTTTT

Basic information

species Glycine max
transcript GLYMA13G20090.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G20090.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv08s0040g02290.t01 (Vitis vinifera), 3'ss of exon 9
gtagaaagttttagaaagtttaactttttattctatgaatctaactaaggata---aatcatgat-gagctttgttatatatacagGAAGCATCCTGGGTGCTGTCTAATATAGCTGCTGGTTCTGTTGAGCACAAGCAGTTGATATATTCTAGTGAGGCAGTGCCTGTGCTATTGCGCCTTTTTT
           || |  || |  | || |  || ||||   |||  | ||  |   | ||    | ||   || | || |||  |||||||| | |||||||| || |||||||||||||||||  |||| |||||| ||||||||||||| ||||| ||||| ||  || || |||||||| |||
----------gtatattgtctgtcattattatc-atgagattaatcatggtcacccattctcagtagaagcttatcatttatgtagGAAGCAGCTTGGGTGCTATCCAATATAGCTGCTGGTTCCATTGAACACAAGAAGTTGATATATTCAAGTGAAGCAGTACCATTGTTACTGCGCCTTCTTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattctatgaatctaactaaggataaatcatgatgagctttgttatatatacagGAAGCATCCTGGGTGCTGTCTAATATAGCTGCTGGTTCTGTTGAGCACAAGCAGTTGATATATTCTAGTGAGGCAGTGCCTGTGCTATTGCGCCTTTTTT
           atctaac  putative branch site (score: 2)
                                       tttgttatatataca  TA-rich tract