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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacttctaatgttttatattttgcataacatattataatgcccttctactgcttatttagttgtcttcatgaaacagGCTGGCAAGAAACTTCTGCTAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCAGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTT

Basic information

species Glycine max
transcript GLYMA13G17950.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17950.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 9
gtattacttctaatgttttatattttgcataacatat-----tataatgcccttctactgcttatttagttgtcttcatgaaacagGCTGGCAAGAAACTTCTGCTAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCAGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTT
          ||||| || |   ||| || || ||||     ||| |||   |||   || | || | ||  | ||| |  |  ||||||| ||||| ||  |||| || || ||||| |||||||  |||||||||||||||||| ||||||| ||||| | |||||||||||| || ||||  |
---------gtaatggttcagtctttacacaatatatctaactatgatggt-ttcagttgttaatattgtcatgttcgttca-tagGCTGGTAAGAAGCTCTTGCTTATCACAAACTCGGATTATCACTACACAGACAAAATGATGAAGCATTCATTTAACAAATTCCTTCCCAATGACATGGACT

upper sequence: GLYMA13G17950.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 9
gtattacttctaatgttttatattttgcataacat---attataatgcccttctactgcttatttagttgtcttcatgaaacagGCTGGCAAGAAACTTCTGCTAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCAGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTT
||||   |   | | || ||   ||||    |  |   ||| |  |    |     |  | | || | | |  |  |  | ||||||||||| || ||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||| ||||| | ||||||||| || |||||||| |
gtatgcttataactcttctagtctttgtgacaggtgaaattgttgtaagatctccttattcacttggatattcttttctatcagGCTGGCAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcataacatattataatgcccttctactgcttatttagttgtcttcatgaaacagGCTGGCAAGAAACTTCTGCTAATTACCAACTCAGATTATCTTTACACAGACAAAATGATGCAGCATTCTTTTAATAGATTCCTTCCCAACGATATGGGTT
 gcataac  putative branch site (score: 3)
                                      ttgtcttc  putative PPT
     acatattataat  TA-rich tract