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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atattttccatcaattaatcattgtggcttgattgtagattttgcttggtgaatgatctttgcttatggttggctttttatttatttattatttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAG

Basic information

species Glycine max
transcript GLYMA13G17200.2
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17200.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv11s0016g00700.t01 (Vitis vinifera), 3'ss of exon 9
-atattttccatcaattaatcattgtggcttgattgtaga-ttttgcttggtgaatgatctttgcttatggttggctttttatttat----ttattatttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAG
  |  |     |  |||    || |  |   || | | ||  ||| |||    |     | ||| ||||  | | | ||  | | ||     | ||  || || |||||| ||  | || |   | ||||||||  |||| ||||| |||| ||| |||||||||||||||||||||||||||||||| |||
cttgctggttctgcatttgatatggatgtccgagtttggagctttactttacaa-----cattg-ttatcatagaccttacaatcatagtactctttcttgtgcagAAGATGGGAAAGACAAGTCAAATGATGAAGCTCCAGAGAACAATCTTCAGTATACCACTGTTTATGTTGGCAATCTTGCTCCAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13562965|gb|BG551185.1|BG551185
EST:     GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
EST: gi|193400330|gb|FK367929.1|FK367929
EST:     GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
EST: gi|193618203|gb|FK570745.1|FK570745
EST:     GCAGAGTTCGGATTCAAAAATTGTTGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
EST: gi|193402169|gb|FK370216.1|FK370216
EST:     GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAG
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAG
EST: gi|208294750|gb|GE093869.1|GE093869
EST:     GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
EST: gi|208140082|gb|GD936902.1|GD936902
EST:     GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
EST: gi|208052461|gb|GD851758.1|GD851758
EST:     CGGATTACAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: CGGATT-CAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
EST: gi|208254159|gb|GE051629.1|GE051629
EST:     ATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: ATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
EST: gi|208196836|gb|GD995831.1|GD995831
EST:     GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAG
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAG
EST: gi|207826074|gb|GD799815.1|GD799815
EST:     GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
EST: gi|208136493|gb|GD934091.1|GD934091
EST:     GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAAT
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAAT
EST: gi|193377660|gb|FK341436.1|FK341436
EST:     GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTC
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTC
EST: gi|151407111|gb|EV276926.1|EV276926
EST:     GCAGAGTTCGGATTCAAAAATCGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
EST: gi|193365227|gb|FK331468.1|FK331468
EST:     GCGGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
EST: gi|42723064|gb|CK768963.1|CK768963
EST:     GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCG                         AAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT
genomic: GCAGAGTTCGGATTCAAAAATTGTCGTGGAGTTGATCAATGGATCATCCGgtgagattga ... atttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtgaatgatctttgcttatggttggctttttatttatttattatttttgtagAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCGGAG
                                           ttattttt  CT-rich tract
                        ttggctttttatttat  TA-rich tract