1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttattaatggttatcagaaatattgaagttctgatgtacttattttgatggttacttgtgactgaggtctttgttggttatgtttgttaacttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAAGAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCA
species | Glycine max |
transcript | GLYMA13G05700.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTCCAG TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAAEST: gi|8403580|gb|BE059214.1|BE059214
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAAEST: gi|208218482|gb|GE020490.1|GE020490
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAG TCTCGAAGACCCAACCACGTGAAATEST: gi|193534371|gb|FK493390.1|FK493390
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGA-G-CCCAACCACGTGAAAT
EST: CCTGTTGAGAGAAAATGGGCCC-TGGGCTTCAG TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAAEST: gi|208194268|gb|GD992437.1|GD992437
genomic: CCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: GGGCCCTTGGGCTTCAG TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAAEST: gi|22540977|gb|BU090820.1|BU090820
genomic: GGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAAEST: gi|7234476|gb|AW569813.1|AW569813
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAAEST: gi|208219813|gb|GE018937.1|GE018937
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAA
EST: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAG TCTCGAGCCCAACCACGTGAAAT
genomic: GAATGCGGCAACAGTTCCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGgtgcagtgtt ... cttgtgatagTCTCGAGCCCAACCACGTGAAAT
tgatggttacttgtgactgaggtctttgttggttatgtttgttaacttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAAGAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCA
tgttaac putative branch site (score: 2)
ttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattaatggttatcagaaatattgaagttctgatgtacttattttgatggttacttgtgactgaggtctttgttggttatgtttgttaacttgtgatagTCTCGAGCCCAACCACGTGAAATAATGACTGAGGTCCTTAAAGCTCTACAAGAATTAAATGTTTGTTGGAAGAAGATTGGACACTATAACATGAAGTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG