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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatcaaaatgactgaatctttttcttgtatagttggcttgcttttactcacattgtcaaaacataaaacattagaatttgtaatttttggatacagGTTGGACTTCATGCAGAATATTCCTATGCTAGTAGTTTGGCTCGTTTTGGTGCATCTCTAGGACCTATTGCTTGGAAAATTGCTTCGCACAGGATTCAAC

Basic information

species Glycine max
transcript GLYMA13G05000.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G05000.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv19s0090g00610.t01 (Vitis vinifera), 3'ss of exon 8
gtatgtatcaaaatgactgaatctttttcttgtatagttggcttgcttttactcacattgtcaaaacataaaacattagaatttgtaatttttggatacagGTTGGACTTCATGCAGAATATTCCTATGCTAGTAGTTTGGCTCGTTTTGGTGCATCTCTAGGACCTATTGCTTGGAAAATTGCTTCGCACAGGATTCAAC
||||||| | ||   | | |    |   |||| ||  |     ||| |||   | |||                     | ||| |  ||||  ||  |||||||| |||||||||||  |||| |||||||| ||  | |||||||||| |||  |||| |||||| ||||||||||| |||| || || |||||| | |
gtatgtagccaataaatttacatctccccttgaatgctc----tgcatttgtactcatc--------------------agtttct--ttttctgaatcagGTTGGGCTTCATGCAGATCATTCTTATGCTAGGAGCCTAGCTCGTTTTGCTGCTACTCTTGGACCTGTTGCTTGGAAAGTTGCCTCCCAGAGGATTGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttactcacattgtcaaaacataaaacattagaatttgtaatttttggatacagGTTGGACTTCATGCAGAATATTCCTATGCTAGTAGTTTGGCTCGTTTTGGTGCATCTCTAGGACCTATTGCTTGGAAAATTGCTTCGCACAGGATTCAAC
   tactcac  putative branch site (score: 1)
                                          ttttt  putative PPT
                aaaacataaaacatta  TA-rich tract