1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcttaattctgaatgatatagcctaagatctttgagcttttgtgaagtgattttgtaaggcaaattatagtaatgaataagaacttttgcacatttgcagGAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATATACCAAGAAGGGACTGGAATGGGTGAACACAACTGAGAGTCTGAAAGAT
species | Glycine max |
transcript | GLYMA13G04410.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAG GAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATAEST: gi|120534267|gb|EH262400.1|EH262400
genomic: TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaa ... acatttgcagGAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATA
EST: TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAG GAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATAEST: gi|21257107|gb|BQ453995.1|BQ453995
genomic: TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaa ... acatttgcagGAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATA
EST: TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAG GAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATA
genomic: TTTGCAATCAGTGAGACAGCTTTTGTAATATTCCTACTCATGGCAACCAGgtaaaagcaa ... acatttgcagGAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATA
agtgattttgtaaggcaaattatagtaatgaataagaacttttgcacatttgcagGAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATATACCAAGAAGGGACTGGAATGGGTGAACACAACTGAGAGTCTGAAAGAT
aaattatagtaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttaattctgaatgatatagcctaagatctttgagcttttgtgaagtgattttgtaaggcaaattatagtaatgaataagaacttttgcacatttgcagGAGGTTAAAAGCTGACAGGTTCTTCACAAGCAACTTTAACGAAGAGACATATACCAAGAAGGGACTGGAATGGGTGAACACAACTGAGAGTCTGAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - -tgaatga
- - - - - - - - - - - - - - - - - -gcttttg
- - - - - - - - - - - - - - - - - - - - - tgaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataagaa