1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgatatttactcaaacagtgtatgacaatcccattattggatcagtgtaaaaaacctttactcagaatattctaataaatttgcttcatcaattttgcagGATACAAGGATTATGTAGGCTTCTTGTGCACAACACCCAGCATTGATGTTCATGAGATAAGGCACTACACTCATACACCATGTAACACCACCATGGGAAA
species | Glycine max |
transcript | GLYMA13G00580.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATGTTGATCCAACAGCTGCATTGGACCCTGGGCTCATCTTCGATGCAG GATACAAGGATTATGTAGGCTTCTTGTGCACAACACCCAGCATTGATGTTCEST: gi|9900706|gb|BE609674.1|BE609674
genomic: ACATGTTGATCCAACAGCTGCATTGGACCCTGGGCTCATCTTCGATGCAGgtttgatttc ... aattttgcagGATACAAGGATTATGTAGGCTTCTTGTGCACAACACCCAGCATTGATGTTC
EST: ACATGTTGATCCAACAGCTGCATTGGACCCTGGGCTCATCTTCGATGCAG GATACAAGGATTATGTAGGCTTCTTGTGCACAACACCCAGCATTGATGTTC
genomic: ACATGTTGATCCAACAGCTGCATTGGACCCTGGGCTCATCTTCGATGCAGgtttgatttc ... aattttgcagGATACAAGGATTATGTAGGCTTCTTGTGCACAACACCCAGCATTGATGTTC
tgtaaaaaacctttactcagaatattctaataaatttgcttcatcaattttgcagGATACAAGGATTATGTAGGCTTCTTGTGCACAACACCCAGCATTGATGTTCATGAGATAAGGCACTACACTCATACACCATGTAACACCACCATGGGAAA
ttctaat putative branch site (score: 2)
tcagaatattctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatatttactcaaacagtgtatgacaatcccattattggatcagtgtaaaaaacctttactcagaatattctaataaatttgcttcatcaattttgcagGATACAAGGATTATGTAGGCTTCTTGTGCACAACACCCAGCATTGATGTTCATGAGATAAGGCACTACACTCATACACCATGTAACACCACCATGGGAAA
- - - - -ctcaaac
- - - - - - - - - tgtatga
- - - - - - - - - - - - -caatccc
- - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttca