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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctcattaataagctctaaaggttatctgtcactactatattgatttcactgcacctggaaatgaagttctcaaccccaaaccttttgcttaatgatctattacagGTGGCAGTGGTGTTCCACCTGGTACTAGGCCTGAAACTTGTAAGCGATGTAAAGGGTCAGGAGTG

Basic information

species Glycine max
transcript GLYMA12G36820.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27446060|gb|CA953183.1|CA953183
EST:     GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTG                         GTGGCAGTGGTGTTCCA
genomic: GTGCACCAAAACTTTGACATTTCAAACGGATGTGCTTTGTAATGCTTGTGgtatgctcat ... tctattacagGTGGCAGTGGTGTTCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcacctggaaatgaagttctcaaccccaaaccttttgcttaatgatctattacagGTGGCAGTGGTGTTCCACCTGGTACTAGGCCTGAAACTTGTAAGCGATGTAAAGGGTCAGGAGTG
                                    gcttaat  putative branch site (score: 4)
                                      ttaatgatctatta  TA-rich tract