1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtcaatttctttggccaatattgaactttaaacaccccaaaacaagactgatgattagttattttactagatgattttttgtattctggtgtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGACTCAGGCTTCGTCATGCTCCCATTACCACCCTCAATATTGTCCAAGCTT
species | Glycine max |
transcript | GLYMA12G35840.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|58023048|gb|CX709789.1|CX709789
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|9984467|gb|BE658575.1|BE658575
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|192299272|gb|FG990726.1|FG990726
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|58014344|gb|CX701086.1|CX701086
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|105633398|gb|DW246761.1|DW246761
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|58017718|gb|CX704460.1|CX704460
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|16347534|gb|BI973129.1|BI973129
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGEST: gi|6227725|gb|AW156324.1|AW156324
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGG
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|15813223|gb|BI785498.1|BI785498
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAGCTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|16348757|gb|BI974352.1|BI974352
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|58022689|gb|CX709430.1|CX709430
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|58021059|gb|CX707801.1|CX707801
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCTTTACTTGAAGCAAAGAEST: gi|10234113|gb|BE803001.1|BE803001
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTATGAAACTCCTACTTCAT GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|16997193|gb|BM086565.1|BM086565
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGAEST: gi|17963472|gb|BM270221.1|BM270221
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
EST: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAG GTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
genomic: GGGATCAATTGAGGAACAAATATGAAGAAACTAGGAAACTCCTACTTCAGgtaatgccac ... gtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGA
gactgatgattagttattttactagatgattttttgtattctggtgtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGACTCAGGCTTCGTCATGCTCCCATTACCACCCTCAATATTGTCCAAGCTT
gactgat putative branch site (score: 3)
attagttattttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaatttctttggccaatattgaactttaaacaccccaaaacaagactgatgattagttattttactagatgattttttgtattctggtgtacttgtagGTGGCTGGACACAAGGAAATTCTTGAAGGGGACCCTTACTTGAAGCAAAGACTCAGGCTTCGTCATGCTCCCATTACCACCCTCAATATTGTCCAAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - ctttggc
- - - - - - - - - - - - - - - - cacccca
- - - - - - - - - - - - - - - - - - - - - - - actgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attctgg