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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaattctaacctatcctgatacaagtcttcatattattaaaagcataatgcatttttttttctttctacttaaaacatctgcacttctgatacatattatgtttttttttcctctcaatttagGAATAACAATATTTCTACATTACCAGTGGAGATAGGGGCCCTTTCTCGCCTTGGGACTTTAGATCTTCACTCTAACCAG

Basic information

species Glycine max
transcript GLYMA12G35110.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21889017|gb|BQ742230.1|BQ742230
EST:     ATCCCTTCATCAATCATTGGTTGTCATTCACTTACAGAGCTTTATTTGGG                         GAATAACAATATTTCTACATTACCAGTGGAGATAGGGGCCCTTTCTCGCCT
genomic: ATCCCTTCATCAATCATTGGTTGTCATTCACTTACAGAGCTTTATTTGGGgtcaaattct ... ctcaatttagGAATAACAATATTTCTACATTACCAGTGGAGATAGGGGCCCTTTCTCGCCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaaaacatctgcacttctgatacatattatgtttttttttcctctcaatttagGAATAACAATATTTCTACATTACCAGTGGAGATAGGGGCCCTTTCTCGCCTTGGGACTTTAGATCTTCACTCTAACCAG
                ttctgat  putative branch site (score: 3)
                          tattatgttttttttt  putative PPT
                   tgatacatattatgtt  TA-rich tract