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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataatactagttggtctattggcataatttgatttatttatttatttattggtttaatcatgttacacaatttttttaaaaaggtgatgatctcaattctcgactaaaaaatgtgcaaataagtttagttgaccccactctttccttttgttagGAAAAATTGATGATTCAGAACGACTTCGTCCAGAAGAATTAAACCAACAGAACATAGAGGCTTTGGTTGCTGAAAGTAATCTG

Basic information

species Glycine max
transcript GLYMA12G34750.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34750.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 3'ss of exon 15
gtataatactagttggtctattggcataatttgatttatttatttatttattggtttaatcatgttacacaatttttttaaaaaggtgatgatctcaattctcgactaaaaaatgtgcaaataagtttagttgaccccactctttccttttgttagGAAAAATTGATGATTCAGAACGACTTCGTCCAGAAGAATTAAACCAACAGAACATAGAGGCTTTGGTTGCTGAAAGTAATCTG
                                               ||  |  |||  |  |  ||   ||||   |   || | ||    ||   ||  | | | |   |   | ||  ||    |  |  |   || |||| | |||    ||  || || |||||||| || || ||||||||||||||| | ||||| ||||| ||||| ||||| || |||||||| || |||
-----------------------------------------------ttgataatttttttgt-ctagtgaattgaatggcaatgatgcatgtcctgatggttgtccagtga---tccagtta----tgatatatttcaatcttccatttcac-agCCAACATCGATGATTCTGAGCGGCTTCGTCCAGAAGAACTGAACCAGCAGAATATAGAAGCTTTAGTAGCTGAAAGCAACCTG

upper sequence: GLYMA12G34750.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 3'ss of exon 14
gtataatactagttggtctattggcataatttgatttatttatttatttattggtttaatcatgttacacaatttttttaaaaaggtgatgatctcaattctcgactaaaaaatgtgcaaataagtttagttgaccccactctttccttttgt-tagGAAAAATTGATGATTCAGAACGACTTCGTCCAGAAGAATTAAACCAACAGAACATAGAGGCTTTGGTTGCTGAAAGTAATCTG
                                          | || |||||  ||| | ||| |||       ||||| |  | ||  || | ||| | ||  | |  |||  |    ||| | | | |||        ||||||||    | |||  ||||||||||| || || || ||||| ||||||||||| || ||||| || ||||| || || |||||||| | |||||||
-----------------------------------------gtctaattatt--ttttaccat-ttatttttcctttttgatgatgtt-tggtttcactccttaaatggaaatgg----aatgaatgtggtt--------tctttcctggactgtagCCAAAATTGATGACTCTGAGCGGCTTCGCCCAGAAGAATTGAATCAACAAAATATAGAAGCCTTAGTTGCTGAGAATAATCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgactaaaaaatgtgcaaataagtttagttgaccccactctttccttttgttagGAAAAATTGATGATTCAGAACGACTTCGTCCAGAAGAATTAAACCAACAGAACATAGAGGCTTTGGTTGCTGAAAGTAATCTG
                                 ccccactctttccttt  CT-rich tract
                 aaataagtttagtt  TA-rich tract