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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaccaattgtgttactactattttttggcttctaatttattattctccttccaaagggaggggttatatatattcatgtcacgatgacatgtttaaatcataccaatacttgtcctgaattacagATACTCTACTTTATTGGGTTTGGTTTTTTCTGCATTGAATCACTGCTGAGCATTTGGGTTATTCAG

Basic information

species Glycine max
transcript GLYMA12G32860.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G32860.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os05g42330.1 (Oryza sativa), 3'ss of exon 10
gtaagtaccaattgtgttactactattttttggcttctaattta-ttattctccttccaaagggaggggttatatatattcatgtcacgatgacatgtttaaatcataccaatacttgtcctgaattacagATACTCTACTTTATTGGGTTTGGTTTTTTCTGCATTGAATCACTGCTGAGCATTTGGGTTATTCAG
                  || || |  |      ||||   |   ||| ||  | |   || |          ||||| |    ||||    | || ||  |||    || | |||  |      |  |||||| | |||||| | |||||||| || |||||| |||| ||||||||||||||| | || ||||||
------------------accaccacatgcatctttctggctggcttagtcagcctatgaaagc--------catatactggattcac----atatcttataatacctccta-actattttcacttggcagATATTTTACTTTGTCGGGTTTGGATTATTCTGCCTTGAGTCACTGCTGAGCATTGGTGTCATTCAG

upper sequence: GLYMA12G32860.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 3'ss of exon 10
gtaagtaccaattgtgttactactattttttggcttctaatttattattctccttccaaagggaggggttatatatattcatgtcacgatgacatgtttaaatcataccaat-acttgtcctgaattacagATACTCTACTTTATTGGGTTTGGTTTTTTCTGCATTGAATCACTGCTGAGCATTTGGGTTATTCAG
                             ||| |    || |||||||     |||      | ||  || | | | |     ||    |   | |    | |   | || | ||   ||||  ||| |||||| ||||| ||||||| ||||| || |||||| ||||||||||||| || || |||||| |||||
---------------------------ccttgac----aaattattatcaggattcatggtagtggctttttttttttcttcttcttttttgtaagaaggattgggatcatttacacttcctatattgcagATATTCTACCTTATTGGATTTGGATTGTTCTGCCTTGAATCACTGCTCAGTATCTGGGTTGTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcatgtcacgatgacatgtttaaatcataccaatacttgtcctgaattacagATACTCTACTTTATTGGGTTTGGTTTTTTCTGCATTGAATCACTGCTGAGCATTTGGGTTATTCAG
                                      cttgtcct  CT-rich tract
                  atgtttaaatcata  TA-rich tract