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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttattattaattttcatatcttttccataattccatccatatattttatacttttaacaacttttctaaaattcctattatttcatagGCTTTGCCACAACAGATCTGCTCTCAAATTGGTTTATGTACTTTTGATGGTACTCAAGGT

Basic information

species Glycine max
transcript GLYMA12G31880.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G31880.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os01g47410.1 (Oryza sativa), 3'ss of exon 9
gtattta--ttattaattttcatatcttttccataattccatccatatattttatacttttaac--aacttttctaaaattcctattatttcatagGCTTTGCCACAACAGATCTGCTCTCAAATTGGTTTATGTACTTTTGATGGTACTCAAGGT-----
|| |  |  ||  ||  || || |    |  |   ||    | |  | |||    |||  ||||  ||||||       ||  |  |       || |    |||    |  | ||||||    | |||||||||||||||||||||||||| |||     
gtttgcagttttctacattccaaaagcatgacgacatgaagttctcaaattcgtcactggtaactgaactttctctgggtttgtgatgc-----agACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catccatatattttatacttttaacaacttttctaaaattcctattatttcatagGCTTTGCCACAACAGATCTGCTCTCAAATTGGTTTATGTACTTTTGATGGTACTCAAGGT
                              ttctaaa  putative branch site (score: 2)
                                      ttcctatt  CT-rich tract
     atatattttatacttt  TA-rich tract