Sequence
atgc intronic sequence ATGC exonic sequencegtttgtattctatggttttatgttcttctctgatatgtaactctgaaataattatgtatatttttatatatgcagTTTTGTTGCCAAAATTTTGGATCATGCACTGGAAGATTCACAATCAAAGTCTAGCCTTGTGAACTCACTTTCAGTGTGTGTTTCTTTATTGGATCCCAAA
Basic information
species | Glycine max |
transcript | GLYMA12G29710.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G29710.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g02770.t01 (Vitis vinifera), 3'ss of exon 9
-------------------gtttgtattctatggtttta-tgttcttctctgatatgtaactctgaaataattatgtatatttttatatat-----gcagTTTTGTTGCCAAAATTTTGGATCATGCACTGGAAGATTCACAATCAAAGTCTAGCCTTGTGAACTCACTTTCAGTGTGTGTTTCTTTATTGGATCCCAAA
| | | || || ||| | ||||| || ||| || | ||| | | | || | | | | | |||||||||||| | || || ||||||||| |||||||||| || ||||| ||| ||||||| ||||| | || || ||| ||||||| |||||||| |||
cacgggccactattttagcgcctctttttaataaaattacttttctttacttataaaaaatatgtatatattcttctctaagtgtgtgtgttttctgcagTTTTGTTGGAAGGATATTTGATCATGCATTGGAAGATTCGCATTCAAAATCTGGCCTTGTCCACTCATTGTCTGTTTGTATTTCTTTGTTGGATCCGAAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192302814|gb|FG998496.1|FG998496EST: ATCGACTCTAGTAATTAAACTTTCAAGCCCAAG TTTTGTTGCCAAAATTTTGGATCATGCACTGGAAGATTCACAATCAAAGTC
genomic: ATCGACTCTAGCAATTAAACTTTCAAGCCCAAGgtttgtattc ... atatatgcagTTTTGTTGCCAAAATTTTGGATCATGCACTGGAAGATTCACAATCAAAGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttcttctctgatatgtaactctgaaataattatgtatatttttatatatgcagTTTTGTTGCCAAAATTTTGGATCATGCACTGGAAGATTCACAATCAAAGTCTAGCCTTGTGAACTCACTTTCAGTGTGTGTTTCTTTATTGGATCCCAAA
atgtaac putative branch site (score: 3)
tttttat putative PPT
atatgtaactctgaaa TA-rich tract