Sequence
atgc intronic sequence ATGC exonic sequencegtgagtcagatttgattgcactgaaatttgctatatgatttacatcttataaatgacagaggtcacagagctttacatgtgtggcagGATGACACATACTTGATGTTGCTGACCACAAGTTCTGATGCATTTTATCATCTTAAGGATTGCAG
Basic information
species | Glycine max |
transcript | GLYMA12G29450.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G29450.3 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 3'ss of exon 9
---gtgagtcagatttg--attgcactgaaatttgctatatgatttac--atcttataaatgacagaggtcacagagctttacatg------tgtggcagGATGACACATACTTGATGTTGCTGACCACAAGTTCTGATGCATTTTATCATCTTAAGGATTGCAG
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actgatagtcactttctgcactcaacggatgcttaatatttgtagcactcatgcaagaaagagcatgaatggttttttttttcttactttcttgtggcagGTTGACACATACTTGATGTTGCTTACTACTAAATCAGATGCTTTCTATCATCTCAAAGATTGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13252674|gb|BG363577.1|BG363577EST: CTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGAT GATGACACATACTTGATGTTGCTGACCACAAGTTCTGATGCATTTTATCAT
genomic: CTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGATgtgagtcaga ... tgtgtggcagGATGACACATACTTGATGTTGCTGACCACAAGTTCTGATGCATTTTATCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatgatttacatcttataaatgacagaggtcacagagctttacatgtgtggcagGATGACACATACTTGATGTTGCTGACCACAAGTTCTGATGCATTTTATCATCTTAAGGATTGCAG
atttacatcttataaa TA-rich tract