Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcagatttgattgcactgaaatttgctatatgatttacatcttataaatgacagaggtcacagagctttacatgtgtggcagGATGACACATACTTGATGTTGCTGACCACAAGTTCTGATGCATTTTATCATCTTAAGGATTGCAG

Basic information

species Glycine max
transcript GLYMA12G29450.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G29450.3 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g02820.t01 (Vitis vinifera), 3'ss of exon 9
---gtgagtcagatttg--attgcactgaaatttgctatatgatttac--atcttataaatgacagaggtcacagagctttacatg------tgtggcagGATGACACATACTTGATGTTGCTGACCACAAGTTCTGATGCATTTTATCATCTTAAGGATTGCAG
   |  |||||  ||    | |  || ||   ||  ||| ||    ||  ||   | |||   ||    |        ||| | |       ||||||||| ||||||||||||||||||||| || || |  || ||||| || |||||||| || ||||||||
actgatagtcactttctgcactcaacggatgcttaatatttgtagcactcatgcaagaaagagcatgaatggttttttttttcttactttcttgtggcagGTTGACACATACTTGATGTTGCTTACTACTAAATCAGATGCTTTCTATCATCTCAAAGATTGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13252674|gb|BG363577.1|BG363577
EST:     CTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGAT                         GATGACACATACTTGATGTTGCTGACCACAAGTTCTGATGCATTTTATCAT
genomic: CTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGATgtgagtcaga ... tgtgtggcagGATGACACATACTTGATGTTGCTGACCACAAGTTCTGATGCATTTTATCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatttacatcttataaatgacagaggtcacagagctttacatgtgtggcagGATGACACATACTTGATGTTGCTGACCACAAGTTCTGATGCATTTTATCATCTTAAGGATTGCAG
     atttacatcttataaa  TA-rich tract