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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacaccctaatccctgttaacttcttggcttacttagtccttatggtagacttgtgttttggcttgatattgacaatttcttattgatagcactgacatgaatgttttacagGTTTATCCGGATTTAGAAGTAGCTTTTGTCATTTCAGAAGAAGAATCCCTCTTTAACGCCTTGTCCAAAACTGTTGAATTACTAGAAGACAATACTGCAT

Basic information

species Glycine max
transcript GLYMA12G28490.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28490.1 (Glycine max), 3'ss of exon 9
lower sequence: AT5G49810.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaatacacccta--atccctgttaacttcttggcttacttagtccttatggtag--acttgtgttttggcttgatatt-gacaatttcttattgatagcactga--catgaatgttttacagGTTTATCCGGATTTAGAAGTAGCTTTTGTCATTTCAGAAGAAGAATCCCTCTTTAACGCCTTGTCCAAAACTGTTGAATTACTAGAAGACAATACTGCAT
||||      | |  | ||   ||     |  |  |   |||     |||   |   | ||| | | |  ||   | |  ||  | ||| |  |  || |  ||   ||||   |||  |||||| ||| |||||||||||||||| ||||||||| ||||||  ||  || |   ||| ||| ||||||||||||| ||| |  ||||||   |||||||  
gtaaagatttcgaccaaccacattggtgacgagtatgcattatgttgtatctcatttaattgagatctaactaactctgagatcaattcatgatcttaacgttgtgtcatgtgcgttcaacagGTCTATTCGGATTTAGAAGTAGCCTTTGTCATTACAGAAGTGGATGCCATTGCTAAAGCCCTGTCCAAAACTGTGGAAGTCTTAGAAGGTCATACTGCTA

upper sequence: GLYMA12G28490.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0035g02060.t01 (Vitis vinifera), 3'ss of exon 2
-------------------------------------------------------------------gtaatacaccctaatccctgttaacttcttggcttacttagtccttatggtagacttgtgttttggcttgatattgacaatttcttattgatagcactgaca----tgaatgttttacagGTTTATCCGGATTTAGAAGTAGCTTTTGTCATTTCAGAAGAAGAATCCCTCTTTAACGCCTTGTCCAAAACTGTTGAATTACTAGAAGACAATACTGCAT
                                                                    | ||  |  | ||       | ||   |||     |  ||    | |  ||   |  |   || | ||| | |      || ||| ||  ||  | ||| |    |  |   ||| ||||||||| | ||| ||||||||||||||||  |||||||||| ||| || ||||||| || ||||||||||| || |||||||| ||||  ||||||||| 
gtacttatttgttttgatattataaatgtactgagtcagaatgttagaagtagtggctatttttcttttcatttaatcaaacaaggagtcacaaattgatc--ccaagattgtcttataagttgataccttagtttgttgtatttttttcctttttcttattattgatagctttatactctttccagGTTTATACAGATCTAGAAGTAGCTTTTGTTGTTTCAGAAGAGGAAGCCATCTTTAAGGCATTGTCCAAAACCGTGGAATTACTGGAAGGGAATACTGCAC

upper sequence: GLYMA12G28490.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0035g01920.t01 (Vitis vinifera), 3'ss of exon 10
-------------------------------------------------------------------gtaatacaccctaatccctgttaacttcttggcttacttagtccttatggtagacttgtgttttggcttgatattgacaatttcttattgatagcactgaca--tgaatgtt--ttacagGTTTATCCGGATTTAGAAGTAGCTTTTGTCATTTCAGAAGAAGAATCCCTCTTTAACGCCTTGTCCAAAACTGTTGAATTACTAGAAGACAATACTGCAT
                                                                    | ||  |  | ||       | ||   |||     |  ||    | |   |   |  |   || | ||| | |    | || ||| |   ||  | ||| |  | |||  |  || ||||||||| | ||| |||||||||||||||||||||||||||| ||  || ||||||| ||  |||||||||| || |||||||| ||||  ||||||||| 
gtatttattcattttggtattataaacataccgagtcagaatgttagaagtactgaccatttttcttttcatttaatcaaacaaggagtcacaaattgatc--ccaagattgtcttacaagttgataccttagtttgttgtatttatttccttttccttattattgatagctaaatactctttccagGTTTATTCAGATCTAGAAGTAGCTTTTGTCATTTCAGAAGAGGAGGCCATCTTTAAGGCACTGTCCAAAACCGTGGAATTACTGGAAGGGAATACTGCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggcttgatattgacaatttcttattgatagcactgacatgaatgttttacagGTTTATCCGGATTTAGAAGTAGCTTTTGTCATTTCAGAAGAAGAATCCCTCTTTAACGCCTTGTCCAAAACTGTTGAATTACTAGAAGACAATACTGCAT
                                 cactgac  putative branch site (score: 2)
                 aatttcttattgata  TA-rich tract