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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcctgtttctttgaaattgcatgatctgatgatcctcactgttattatatgcatataaaaaccccatgatttgctgtgcttacacagctgattatggcatctttattaacagGTATTTTAATTGAGAATATGAGACGTGAAGGGTTTGAGTTATCTGTCTCACCACCCAAAGTAAT

Basic information

species Glycine max
transcript GLYMA12G14080.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G14080.1 (Glycine max), 3'ss of exon 9
lower sequence: AT2G31060.3 (Arabidopsis thaliana), 3'ss of exon 9
gtttgttcctgtttctttgaaattgcatgatctgatgatcctca----ctgttatta--tatg-catat---aaaaaccccatga-----tttgctgtgct-tacacagctgatta--tggcatctttattaacagGTATTTTAATTGAGAATATGAGACGTGAAGGGTTTGAGTTATCTGTCTCACCACCCAAAGTAAT
|||||||| | |    ||    ||   || | || | | |   |    | | ||| |  |||| || |    | ||| | | | |     |||  |   || | |   |   ||||  |    || |   |||||||||| || |||||||||||||| || ||||| |||||| | || ||||||||||| ||||| ||
gtttgttcttttccagtttgtgtttagtg-tttgttcacctgtaaagacggatataaagtatgacacacgccagaaaacacgtaactgtatttatttctctatgccaggtaaattaatttctgtcgtgtctaacagGTATCTTGATTGAGAATATGAGGCGGGAAGGTTTTGAGCTCTCAGTCTCACCACCTAAAGTCAT

upper sequence: GLYMA12G14080.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv12s0028g02640.t01 (Vitis vinifera), 3'ss of exon 9
--------------------------------------gtttgttcctgtttctttgaaattgcatga--tctgatgatcct--cactgttattatatgcatataaaaaccc---catgatttgctgtgcttacacagctgattatggcatctttatt------aacagGTATTTTAATTGAGAATATGAGACGTGAAGGGTTTGAGTTATCTGTCTCACCACCCAAAGTAAT
                                       |||   |  |||      |||  | |  |  ||| || || ||   ||| ||    | | | | | |||       |   |||   |    ||   |  |||| | |||  | | | ||      ||||||||| ||||||||||||||||| |||||||| |||||| | || ||||||||||| ||||| ||
gtgagttccgttaatcatttatccatcttctatctcatattttaccaagttaaagcaaaaaaggaaaagttcttattatactgctacttttcccttttacgtctcaaattttgttcgccattaagttcaattgt-cttctgaatgtggtttttatgttgtgcaaaacagGTATCTTAATTGAGAATATGAGGCGTGAAGGATTTGAGCTCTCCGTCTCACCACCTAAAGTCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaccccatgatttgctgtgcttacacagctgattatggcatctttattaacagGTATTTTAATTGAGAATATGAGACGTGAAGGGTTTGAGTTATCTGTCTCACCACCCAAAGTAAT
                                          tctttatt  CT-rich tract
                                         atctttattaa  TA-rich tract