1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgcattagtaatcttgttatttattttccaagcattgcttatccttgcattactctgggtaaaaagtaagctctgtctgttttaaatttgttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAATGCAAAGATACTGGTGGCAAACACTGCCATGGACACAGACAAAGTGAAG
species | Glycine max |
transcript | GLYMA12G09250.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG ATTCATTCTTGACAAGAAGATTGGTATTGGACAACCCANACGTATAGAGAAEST: gi|14011898|gb|BG726820.1|BG726820
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAGCGGATAGAGAAEST: gi|7685521|gb|AW756169.1|AW756169
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAAEST: gi|5605812|gb|AI899910.1|AI899910
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: TTCATTCTTAGATGAAGG ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAAEST: gi|18692987|gb|BM521835.1|BM521835
genomic: TTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAAEST: gi|6482991|gb|AW202130.1|AW202130
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAAEST: gi|298191307|gb|HO038786.1|HO038786
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGG ATTCACTCTTGACAAGAAAATTGGTATTGGGCAACCCAAACGTATAGAGAAEST: gi|207706644|gb|GD688592.1|GD688592
genomic: ATTATAAAGAAACCTGGAGGCTCATTAATGGATTCATTCTTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
EST: TTAGATGAAGG ATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
genomic: TTAGATGAAGGgtaatattgc ... ttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAA
tgcattactctgggtaaaaagtaagctctgtctgttttaaatttgttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAATGCAAAGATACTGGTGGCAAACACTGCCATGGACACAGACAAAGTGAAG
tttgtttt CT-rich tract
tgttttaaatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcattagtaatcttgttatttattttccaagcattgcttatccttgcattactctgggtaaaaagtaagctctgtctgttttaaatttgttttggtcagATTCATTCTTGACAAGAAAATTGGTATTGGACAACCCAAACGTATAGAGAATGCAAAGATACTGGTGGCAAACACTGCCATGGACACAGACAAAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
tgcatta
- - - - - - - - - - - - - - caagcat
- - - - - - - - - - - - - - - - - -tgcttat
- - - - - - - - - - - - - - - - - - - - - ccttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaaaaa