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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaactacatctttctaacgtgttgccgacgtatttgactcattattttttttcgtttttttgggttaaggactcgttattatttttatatacttactataatgtgtctcaattatgcatggacagGGTGGTACTCTTATCTGTGGCTGCCATTCATTCCTTTGATT

Basic information

species Glycine max
transcript GLYMA12G07530.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07530.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g03100.t01 (Vitis vinifera), 3'ss of exon 9
gtaagcaactacatctttctaacgtgttgccgacgtatttgactcattattttttttcgtttttttgggttaaggactcgttattatttttatatacttactataatgtgtctcaattatgcatggacagGGTGGTACTCTTATCTGTGGCTGCCATTCATTCCTTTGATT
                   | | ||||  |   |  || |  || || |  |||||   |||     |   ||  | |    |||  ||  || |  ||   |  | |  | | || | |   |||||||| |||||||||||||| |||||||||||||| ||  |||||
------------------gtga-gtgtgacttgcaaatatttctaataacatttttatattt-----gaaaaaaaaataaaaattgattgaatttctttg--agtaagctttttaactttatgtggacagGCTGGTACTCTTATCTATGGCTGCCATTCATCCCACTGATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcgttattatttttatatacttactataatgtgtctcaattatgcatggacagGGTGGTACTCTTATCTGTGGCTGCCATTCATTCCTTTGATT
                   tacttac  putative branch site (score: 1)
     ttattatttttatata  TA-rich tract