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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaaccctacatctgatctgaattggatcattcggatcttatcctaattcgtctattcttcctaacttttacaacaaactttaacagtttcattttgcagGATGATAAAGATGAGCTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGGTG

Basic information

species Glycine max
transcript GLYMA12G07340.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os03g50330.1 (Oryza sativa), 3'ss of exon 8
---agaaccctacatctgatctgaattggatcattcggatcttatcctaattcgtctattcttcctaacttttacaacaaactttaacagtttcattttgcagGATGATAAAGATGAGCTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGGTG
    | |      |  || | | |      |  |||| |   |     | |      ||   |    |||||    | ||| | | |     |  | |||||||||||| | |||  |||| || | || || || ||||||||||||||||||||||||||   |  ||   
ggacggagggagtaagtgtttttaggcaatttcttcgtacaattgtggagtcta---atggcttagtactttactgataaagtgttatgtgattgtattgcagGATGATGATGATCTGCTTTGGAGGTCTCCAGGTACTCCTGTTTTCACTGCACCAGAATGCTGTCAAG---

upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 9
--------agaaccct-acatctgatctgaattggatcattcggatcttatcctaattcgtctattcttcctaacttttacaacaaactttaacagtttcattttgcagGATGATAAAGATGAGCTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGGTG
        |||    | | || || |    | ||||  |      | |  |  |||  |||  | |     |  ||| | | ||    || ||  | ||  || ||||||||||||| |||||||| || || || ||||||||||||||||| ||||||||||| ||   |||||   
ttgtgttcagagtttttaaatttggt----agtggaatacct---tttagttttaaggcgttgaatgcaatt--cttgtgccaccttgttgaaatggtttcttatgcagGATGATAATGATGAGCTCCGCCGTTCTCCTGGCACTCCTGTTTTTACTGCACCAGAGTGCTGTTTAG---

upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 9
lower sequence: EFJ15000 (Selaginella moellendorffii), 3'ss of exon 6
agaaccctacatctgatctgaattggatcattcggatcttatcctaattcgtctattcttcctaacttttacaacaaactttaacagtttcattttgcagGATGATAAAGATGAGCTT---CGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGGTG------
                                         | | |    || | |  |       |   |  | ||  |||      ||  |||||| | | |   | ||||| |||   || ||||| |||||||||||||| ||||| |||||||||||   |  ||||       
----------------------------------------gtaccacagagtttgtggtgtggtgttgagatga-aagttttgctttctttcttttgccgcagGGCGATGATGATCTTTTACGTCGATCTCCTGGCACTCCTGTCTTCACAGCACCAGAATGCTGTAAAGGTATTTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattcgtctattcttcctaacttttacaacaaactttaacagtttcattttgcagGATGATAAAGATGAGCTTCGGCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTATTTTAGGTG
                                          tttcatttt  CT-rich tract
                 taactttta  TA-rich tract