1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...cactaactgacttctttttctgtctacccatttctaaattgatgcttgaatgctttatcagttgtccatcatttctctcacagtctttggtgtgtttcagTGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTG
species | Glycine max |
transcript | GLYMA12G06990.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCG TGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGEST: gi|192315616|gb|FK007444.1|FK007444
genomic: AATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGgtaattaaag ... tgtgtttcagTGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTG
EST: AATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCG TGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGEST: gi|298196896|gb|HO041639.1|HO041639
genomic: AATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGgtaattaaag ... tgtgtttcagTGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTG
EST: AATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCG TGGTGAACCCTCGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTG
genomic: AATATTGATGATGGACGTGTTGTCAGCAACTTCATTGCTCAAGCAATTCGgtaattaaag ... tgtgtttcagTGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTG
ttgaatgctttatcagttgtccatcatttctctcacagtctttggtgtgtttcagTGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTG
ctctcac putative branch site (score: 3)
tttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactaactgacttctttttctgtctacccatttctaaattgatgcttgaatgctttatcagttgtccatcatttctctcacagtctttggtgtgtttcagTGGTGAACCCTTGACAGTCCAGTCTCCAGGAACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTG
cactaac
- - - - - - - - - - - -ctaccca
- - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - -gaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtctttg