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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgttatgatatgcacatttaatttcaagcttatggttatcatatgtgaagttatttatgatatatagttttatgaaccggtcatgtaatttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAAAATAATCTTGTACAGCTAACTGAGGCTAGTGTGCCGCTTCTTCTTCCTC

Basic information

species Glycine max
transcript GLYMA12G06450.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06450.3 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g05100.t01 (Vitis vinifera), 3'ss of exon 8
tgtgttatgatatgcacatttaatttcaagcttatggttatcatatgtgaagttattt-atgat-atatagttttatgaaccggt---catgtaatttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTG--CTTAGAAAATAATC---TTGTACAGCTAACTGAGGCTAGTGTGCCGCTTCTTCTTCCTC
    | ||  | | |  || |  | | ||    ||  ||| ||||||     || ||  ||| | | |||| | | | | ||  |   |||  ||||  ||||||||||||||||||||  ||||    |||| || || |||||||||  | ||| ||| ||     ||||||||||||||||||||||||||    | |||  | |  
----tgattttgttcttatgtgttatgaataccatc-ttaacatatgcatgattcttccatgttcagatagctctctaaccctttgtacatcaaattgtttgcagAAAGGAGAATTGCTATTCAG---TCTCCACACCCTGCTTAGGTGGGCATAGGAAAGAAAGAAGTTGTACAGCTAACTGAGGCTAGTGTGAGCTTCCTTTCTTC--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204205|gb|BI426973.1|BI426973
EST:     CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAG                         AAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
genomic: CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAGgtacatgttc ... tttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
EST: gi|213591020|gb|DB973775.1|DB973775
EST:     CTATGGAAAGCACATTGTCTCTCGTGTAGAANAACTTGTTGCAGCTGGAG                         AAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
genomic: CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAGgtacatgttc ... tttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
EST: gi|193654491|gb|FK597801.1|FK597801
EST:     CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAG                         AAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
genomic: CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAGgtacatgttc ... tttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
EST: gi|207799718|gb|GD770565.1|GD770565
EST:     CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAG                         AAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA
genomic: CTATGGAAAGCACATTGTCTCTCGTGTAGAAAAACTTGTTGCAGCTGGAGgtacatgttc ... tttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgaagttatttatgatatatagttttatgaaccggtcatgtaatttattgcagAAAGGAGAATTGCTGCTCAGGCTCCTCCTCAACCCGCTTAGGTGCTTAGAAAATAATCTTGTACAGCTAACTGAGGCTAGTGTGCCGCTTCTTCTTCCTC
     agttatttatgatata  TA-rich tract