Sequence
atgc intronic sequence ATGC exonic sequencegtaaatcatcaatccctaagactttatttatgctaaacctgataatcacatttttttcattactgcatgctttttgttcttttttcagGAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAGTACAAAGCCAGGAACAGGACAGTGTGCTTGATGATTGTAAACGTTTGTGTGATT
Basic information
species | Glycine max |
transcript | GLYMA12G01250.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G01250.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv10s0003g01150.t01 (Vitis vinifera), 3'ss of exon 11
---------gtaaatcatcaatccctaagactttatttatgctaaacctgataatcacatttttttcattactgcatgctttttgtt-cttttttcagGAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAGTACAAAGCCAGGAACAGGACAGTGTGCTTGATGATTGTAAACGTTTGTGTGATT
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gtaattgattttactcatcatgcctttatgagctagggacaagtaagc-aaaaggtggatatctcaaacta-tgtatttttgctgttgcttttattagGAAGCAGAAGGTGTTGTGATGGCAATCCCAATGCCTGGGCATCCAGTTCCTAGCCAAGAAGAGGAAAGTGTGCTGGATGATTGTAGATGCCTTTGTGAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254317615|gb|GR826599.1|GR826599EST: TTAAAGCTACGGCAGCAGTTGAAAGTCTTAAACGGATATTTCCAGCAGTG GAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAGTACAA
genomic: TTAAAGCTACGGCAGCAGTTGAAAGTCTTAAACGGATATTTCCAGCAGTGgtaaatcatc ... cttttttcagGAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAGTACAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaacctgataatcacatttttttcattactgcatgctttttgttcttttttcagGAAGCAGAAGGCATTGTTATGGCTATACCAATGCCTGGACATCCAGTACAAAGCCAGGAACAGGACAGTGTGCTTGATGATTGTAAACGTTTGTGTGATT
catgctttttgttctt CT-rich tract
ataatcacattttttt TA-rich tract