Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttgctttatctttctctgttttattttcctaactttgatttgagtattaatgttgttaacaacagaaattgttacttcgatactgatacagTGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGTTGCAACTAACAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACGCAAG

Basic information

species Glycine max
transcript GLYMA11G37760.3
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814848|gb|BI787123.1|BI787123
EST:     AAGCATCTTTCCCCCTTCTGTGTGCACAAGAGGGAACTTTACTTCCCATT                         TGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGT
genomic: AAGCATCTTGCCCCCTTCTGTGTGCACAAGAGGGAACTTTACTTCCCATTgtaatcttgc ... actgatacagTGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGT
EST: gi|14258424|gb|BG881332.1|BG881332
EST:     AAGCATCTTTCCCCCTTCTGTGTGCACAAGAGGGAACTTTACTTNCCATT                         TGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGT
genomic: AAGCATCTTGCCCCCTTCTGTGTGCACAAGAGGGAACTTTACTTCCCATTgtaatcttgc ... actgatacagTGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGT
EST: gi|17519483|gb|BM188525.1|BM188525
EST:     AAGCATCTTGCCCCCTTCTGTGTGCACAAGAGGGAACTTTACTTCCCATT                         TGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGT
genomic: AAGCATCTTGCCCCCTTCTGTGTGCACAAGAGGGAACTTTACTTCCCATTgtaatcttgc ... actgatacagTGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGT
EST: gi|8827962|gb|BE211692.1|BE211692
EST:     AAGCATCTTGCCCCCTTCTGTGTGCACAAGAGGGAACTTTACTTCCCATT                         TGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGT
genomic: AAGCATCTTGCCCCCTTCTGTGTGCACAAGAGGGAACTTTACTTCCCATTgtaatcttgc ... actgatacagTGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatttgagtattaatgttgttaacaacagaaattgttacttcgatactgatacagTGATGAAGCGAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGTTGCAACTAACAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACGCAAG
                                            tactgat  putative branch site (score: 2)
        tattaatgttgttaa  TA-rich tract