Sequence
atgc intronic sequence ATGC exonic sequencegtaagttcccttctagatattagaggcaatgagttgaattcctacctcattatcctgatacaactttacatacatcatccatatctagGCTAATACCGAAGTTATTGCTGGAGAGGGCTTGATTGTGACAGCTGGGGCTATAGATTGTCATGTGCATTTTATATGTCCTCAATTAGTATATGATGCCG
Basic information
species | Glycine max |
transcript | GLYMA11G37250.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G37250.2 (Glycine max), 3'ss of exon 9
lower sequence: AT1G67550.1 (Arabidopsis thaliana), 3'ss of exon 8
gtaagttcccttctagatattagaggcaatgagttgaattcctacctcattatcctgatacaactttacatacatcatccatatctagGCTAATACCGAAGTTATTGCTGGAGAGGGCTTGATTGTGACAGCTGGGGCTATAGATTGTCATGTGCATTTTATATGTCCTCAATTAGTATATGATGCCG
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gtaa-tttatttcactgtataaaacacagtaaataccattttggagtacttactt-------actttctcttgtttatt--ttcttagAATAAGACTGAGGTTATTGCTGGAGAAGGAATGATTGTAACTGCAGGAGCTATTGATTGTCATGTACATTTCATATGTCCTCAATTGGTGTATGAAGCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151394452|gb|EV264323.1|EV264323EST: CAGGAAATCCAGACATTATGAATGATGTATTTCCTAATATGATAATTGGG GCTAATACCGAAGTTATTGCTGGAGAGGGCTTGATTGTGACAGCTGGGGCT
genomic: CAGGAAATCCAGACATTATGAATGATGTATTTCCTAATATGATAATTGGGgtaagttccc ... ccatatctagGCTAATACCGAAGTTATTGCTGGAGAGGGCTTGATTGTGACAGCTGGGGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaattcctacctcattatcctgatacaactttacatacatcatccatatctagGCTAATACCGAAGTTATTGCTGGAGAGGGCTTGATTGTGACAGCTGGGGCTATAGATTGTCATGTGCATTTTATATGTCCTCAATTAGTATATGATGCCG
tcctgat putative branch site (score: 3)
tttacata TA-rich tract