1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tatatccacataaatgaaataagcttatcaagtgagagatgttgctattaaattgctgatttactgtgattcatgttttttaatactggaatgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGCCAAGTGCAGCTGCATAAGTTTTGAGGGGTTTGTGATGGCCGGAGCTCT
species | Glycine max |
transcript | GLYMA11G34980.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|207829987|gb|GD801903.1|GD801903
genomic: TCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTAATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|193469364|gb|FK437642.1|FK437642
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|58016090|gb|CX702832.1|CX702832
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|15662128|gb|BI699499.1|BI699499
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|254323157|gb|GR835765.1|GR835765
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|193472484|gb|FK434869.1|FK434869
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|208197313|gb|GE001545.1|GE001545
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGGACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|58017218|gb|CX703960.1|CX703960
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|193662667|gb|FK603217.1|FK603217
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|193453916|gb|FK419545.1|FK419545
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|5058103|gb|AI736579.1|AI736579
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|14258393|gb|BG881301.1|BG881301
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|208341631|gb|GE136695.1|GE136695
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CTTGATTAACAACAAG ATGCTTAACAAGGAGCATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|193434343|gb|FK401069.1|FK401069
genomic: CTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: GTCTCTCATTAGAAGTGTAATAGCACTCCACAAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|193497576|gb|FK460808.1|FK460808
genomic: GTCTCTCATTAGAAGTGTAATAGCACTCCAC-AACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCGCTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACTGTGEST: gi|58017413|gb|CX704155.1|CX704155
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|58023179|gb|CX709920.1|CX709920
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|207716253|gb|GD697559.1|GD697559
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|207841941|gb|GD816317.1|GD816317
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAGGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTAEST: gi|193651261|gb|FK598996.1|FK598996
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTA
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|207720695|gb|GD701738.1|GD701738
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGEST: gi|208231147|gb|GE034358.1|GE034358
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTG
EST: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAG ATGCTTAACAAGGAACATGAACGG
genomic: CGTCTCTCATTAGAAGTGTAATAGCACTCCACAACTTGATTAACAACAAGgtgagataca ... atgatttcagATGCTTAACAAGGAACATGAACGG
tattaaattgctgatttactgtgattcatgttttttaatactggaatgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGCCAAGTGCAGCTGCATAAGTTTTGAGGGGTTTGTGATGGCCGGAGCTCT
ttttaat putative branch site (score: 3)
attcatgttttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatccacataaatgaaataagcttatcaagtgagagatgttgctattaaattgctgatttactgtgattcatgttttttaatactggaatgatttcagATGCTTAACAAGGAACATGAACGGGCAGAAGACTCGAAAACAGTTACAGTGCCAAGTGCAGCTGCATAAGTTTTGAGGGGTTTGTGATGGCCGGAGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - -ccacata
- - - - - - - - - - - - - - caagtga
- - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atactgg