1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgatatatctttcattgctgaacctgtggaacgattttagatctagtatgtggctgctaaatcagttatcttcatatttagtctctcttctctgtctcagGTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGAAGGGAGAGATGAAGCTGGAAAACCCTGTTTTTCTTCAATAGAAAGAAGT
species | Glycine max |
transcript | GLYMA11G33320.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAG GTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGAEST: gi|18730095|gb|BM525678.1|BM525678
genomic: GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGgtaggctgtt ... tctgtctcagGTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGA
EST: GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAG GTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGA
genomic: GTACTTTGACCGTGATGTTGAATGCATCTTTAAGTTTTTCAGGAAAAGgtaggctgtt ... tctgtctcagGTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGA
gtatgtggctgctaaatcagttatcttcatatttagtctctcttctctgtctcagGTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGAAGGGAGAGATGAAGCTGGAAAACCCTGTTTTTCTTCAATAGAAAGAAGT
tgctaaa putative branch site (score: 2)
tttagtctctcttctc putative PPT
ttatcttcatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatatatctttcattgctgaacctgtggaacgattttagatctagtatgtggctgctaaatcagttatcttcatatttagtctctcttctctgtctcagGTTCAATCTTTCTTTTCAAGAAAGCATAGATGATAATGATGATTCTGATGAAGGGAGAGATGAAGCTGGAAAACCCTGTTTTTCTTCAATAGAAAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - -ctgaacc
- - - - - - - - - - - - - - - - - - - - - - - - - tggctgc