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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaaatattttttgacatcctttctcttgattgcctggaaaatggaattttgtctggcacactcaagaaatttacttacatagtttataaaatagtaccaatatcaaaattgatagaaacaagagaattaataaaacaaagaagaaaaatcaattgaagtttgtaacatatttagttctgaaagttcttgtttgcagCAAAGATAGACCAGGACAATATGAAAGTCATGCTGCATTTACACTCCCAGGGCTGTGTAGGGTTGTTTCAGGGATAAATGTATTTGATCCCAAGTTCAAC

Basic information

species Glycine max
transcript GLYMA11G33240.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G33240.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv04s0079g00230.t01 (Vitis vinifera), 3'ss of exon 9
--------gttagaaatattt-tttgacatcctttctcttgattgcctggaaa-atggaattttgtctggcacactca-agaaatttacttacatagtttataaaatagtaccaatatcaaaattgatagaaacaagagaattaataaaacaaagaagaaaaatcaattgaagtttgtaacatatttagttctgaaagttcttgtttgcagCAAAGATAGACCAGGACAATATGAAAGTCATGCTGCATTTACACTCCCAGGGCTGTGTAGGGTTGTTTCAGGGATAAATGTATTTGATCCCAAGTTCAAC
          ||   | |||| | |||   || | |  |  | ||| |  ||| || |||    | ||||   |||   ||| ||||   ||  | |  |  | |  ||    | | |      |  |     ||| ||  ||   |    |    |  | ||   | |        | |||  || | | || |    | ||||| |||||||||||||||| ||||| |||||||| ||  || ||||||| || |||||||||||||| ||||||||||| || ||| | ||||||||||| ||||||
gtcagaatactaaccaaatttatctgatgcccatacatt--actgcttataaacattgaaa--aggctggtcaactggcagacatttggctatgttggctcgatatcag----agtgttggttctccttatctcaa-agggttcccaccttactataagataacagactat------tgacaatttcactgctaa----tgttgtt-gcagCAAAGATAGACCTGGACAGTATGAAAGCCACACTTCATTTACTCTTCCAGGGCTGTGTAGAGTTGTTTCAGGCATCAATCTCTTTGATCCCAAATTCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaaaatcaattgaagtttgtaacatatttagttctgaaagttcttgtttgcagCAAAGATAGACCAGGACAATATGAAAGTCATGCTGCATTTACACTCCCAGGGCTGTGTAGGGTTGTTTCAGGGATAAATGTATTTGATCCCAAGTTCAAC
                  ttgtaac  putative branch site (score: 2)
                                          ttcttgttt  putative PPT
                 tttgtaacatattta  TA-rich tract