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...ttttatgtagataggggcactttccctacttactttataagatcccatcttggcagtgaggaggaagagtgatataaaattaatgctttttaatatttagGCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACAAGGATGTTTTATGAAATAGTGGTTGCGCCCAGCTATACAGAGAAGGGAC
species | Glycine max |
transcript | GLYMA11G25900.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAA-TGNATGAG GCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACEST: gi|57574924|gb|CX547899.1|CX547899
genomic: CGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTG-ATGAGgtaaatgctc ... taatatttagGCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGAC
EST: CCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAG GCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACAEST: gi|37993938|gb|CF805684.1|CF805684
genomic: CCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAGgtaaatgctc ... taatatttagGCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACA
EST: CCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAG GCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACA
genomic: CCGTGAGTGCATTTGGTGGAATTGTAGCTTTCAATGTGGAAATTGATGAGgtaaatgctc ... taatatttagGCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACA
catcttggcagtgaggaggaagagtgatataaaattaatgctttttaatatttagGCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACAAGGATGTTTTATGAAATAGTGGTTGCGCCCAGCTATACAGAGAAGGGAC
ttttaat putative branch site (score: 3)
tgcttttt CT-rich tract
aagagtgatataaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatgtagataggggcactttccctacttactttataagatcccatcttggcagtgaggaggaagagtgatataaaattaatgctttttaatatttagGCACTTGCTAAAGAAATTCGAGAATTTAGAAGCCCCACAGATGGGGAGACAAGGATGTTTTATGAAATAGTGGTTGCGCCCAGCTATACAGAGAAGGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- -tatgtag
- - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttaatgc