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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtaacatgaatccattatccctattttcactcaggatattgtatgatttgtatcagaggctatttttcacaatcattcaagtattgttcgtctttctgctaatagctccaatgaattttatattccattgtttcagATCAAGATCCAGGAAAATTATTGAGAATATCCGCAGCCAGTTCAAAATCCAGATAGAG

Basic information

species Glycine max
transcript GLYMA11G20970.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17964627|gb|BM271359.1|BM271359
EST:     TATGACGTAGTTTTAATTTTGGATGATCGGGAGCAATTTGCCACACAGGG                         ATCAAGATCCAGGAAAATTATTGAGAATATCCGCAGCCAGTTCAAAATCCA
genomic: TATGACGTAGTTTTAATTTTGGATGATCGGGAGCAATTTGCCACACAGGGgtcagtaaca ... attgtttcagATCAAGATCCAGGAAAATTATTGAGAATATCCGCAGCCAGTTCAAAATCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgttcgtctttctgctaatagctccaatgaattttatattccattgtttcagATCAAGATCCAGGAAAATTATTGAGAATATCCGCAGCCAGTTCAAAATCCAGATAGAG
               tgctaat  putative branch site (score: 2)
 ttccatt  putative PPT
 aatgaattttatatt  TA-rich tract