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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttacattttctctttccttcccttcttcaaacaagaaacaagaaatgcactattgttagctaccttcctaacttgtagATTCTGAAGAAGAAAGGGGTTGTCATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGG

Basic information

species Glycine max
transcript GLYMA11G16320.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G16320.1 (Glycine max), 3'ss of exon 9
lower sequence: AT3G03910.1 (Arabidopsis thaliana), 3'ss of exon 7
-------gttagtttacattttctctttccttcccttcttcaaacaagaaacaagaaatgcactattgttagctaccttcctaacttgtagATTCTGAAGAAGAAAGGGGTTGTCATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGG------
       |  | | |  ||  | | |||     | ||||||     | |  |  | ||   |  | | |    || ||  ||     | ||||  ||||||||||||| ||| | ||||||||||| ||||  |||||||||||||| || || || || ||||| ||||||      
gttattcgaaaatctg-atactttgtttttgctctttcttcttctcaaactcgcgtaacagaa-actctgtaatatctgtct---ccgcagATCTTGAAGAAGAAAGGTGTTATGATCCTCCCAGATATATACGCAAACTCAGGAGGAGTCACTGTAAGTTACTTCGAGTGGGTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcaaacaagaaacaagaaatgcactattgttagctaccttcctaacttgtagATTCTGAAGAAGAAAGGGGTTGTCATCCTCCCAGACATATTTGCAAACTCAGGAGGCGTTACAGTTAGCTACTTTGAGTGG
                                          tcctaac  putative branch site (score: 1)
                                    ctaccttcct  CT-rich tract
                           tattgtta  TA-rich tract