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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaataataattggaacattttctcattttctaaaatatcttacacaacgaattctccttgataattgtgttctgtcaacagTGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG

Basic information

species Glycine max
transcript GLYMA11G16220.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254323235|gb|GR840040.1|GR840040
EST:     CGCCGAAGAAAACCATTACTACAA-GTGCAAGAGATGGAGAGAATTG                         TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
genomic: CGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTGgtaataaata ... ctgtcaacagTGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
EST: gi|16343782|gb|BI969377.1|BI969377
EST:     ATTACTACAAGGTGCAAGAGATGGAGAGAATTG                         TGGAATGGGAAGGTNNNNNNGCCATAGGTGAGAAN
genomic: ATTACTACAAGGTGCAAGAGATGGAGAGAATTGgtaataaata ... ctgtcaacagTGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
EST: gi|12688294|gb|BG154630.1|BG154630
EST:     TGCGCCCAAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTG                         TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
genomic: TGCGCCGAA-GAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTGgtaataaata ... ctgtcaacagTGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
EST: gi|58019646|gb|CX706388.1|CX706388
EST:     ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTG                         TGGAATGGGAAGGTGGCCATGCCATAGGTGAGAAG
genomic: ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTGgtaataaata ... ctgtcaacagTGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
EST: gi|26269516|gb|CA820579.1|CA820579
EST:     ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTG                         TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
genomic: ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTGgtaataaata ... ctgtcaacagTGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
EST: gi|7591313|gb|AW707049.1|AW707049
EST:     ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTG                         TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
genomic: ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTGgtaataaata ... ctgtcaacagTGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
EST: gi|208119495|gb|GD915160.1|GD915160
EST:     ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTG                         TGGAATGGGAAGG
genomic: ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTGgtaataaata ... ctgtcaacagTGGAATGGGAAGG
EST: gi|20448999|gb|BQ253123.1|BQ253123
EST:     ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTG                         TGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
genomic: ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTGgtaataaata ... ctgtcaacagTGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
EST: gi|58022640|gb|CX709381.1|CX709381
EST:     ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTG                         TGGAATGGGAAGGTGGCCATGCCATAGGTGAGAAG
genomic: ATGCGCCGAAGAAAACCATTACTACAAGGTGCAAGAGATGGAGAGAATTGgtaataaata ... ctgtcaacagTGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctaaaatatcttacacaacgaattctccttgataattgtgttctgtcaacagTGGAATGGGAAGGTGGCCAGGCCATAGGTGAGAAG
                                           ttctgtc  CT-rich tract
     aaaatatctta  TA-rich tract