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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctttccccctcacatttgttggatcctcactaatttccccccctttttttccctttaatttttgaggagttcaaaacatctttgatgatttctattgtccattaaagagattgcatcttttgattttccagATTCAGGAGGCACTGGAACGTGCAACTTTTGACAGCAGTTCTCAAGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTA

Basic information

species Glycine max
transcript GLYMA11G15730.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G15730.1 (Glycine max), 3'ss of exon 9
lower sequence: Vv06s0004g03450.t01 (Vitis vinifera), 3'ss of exon 9
----------------------------------gtatctttccccctcacatttgttggatcctcactaatttccccccctttttttccctttaatttttgaggag-ttcaaaacatctttgatgatttctattgtccattaaagagattgcatcttttgattttccagATTCAGGAGGCACTGGAACGTGCAACTTTTGACAGCAGTTCTCAAGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTA
                                  ||          ||  ||||   |   |    | ||| |    |  |  || | |  |     | ||||     |||  |   | ||  |  |  || | ||    | |||| ||     |  | |||||   |||||||||||||||||| |||||||||| ||||| |||| ||| ||||| |||||||| ||||||   ||||||||  |||||||||| || ||||||||||
gtaattcaatttactttctcactgtactcatgttgtgataaataatctttcattatataactatagaataaatctatctgcggttgtcctgtcattgtcttgattttcttctcagtgttttcaa--acctcaactggttttaaaagtgaaattgttctgtgattaaacagATTCAGGAGGCACTGCAACGTGCAACGTTTGATAGCAATTCACAAGTGGGCATAATATTTCATGTGATGGATGCTGTGGAATCACCTCCAACATATTTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catctttgatgatttctattgtccattaaagagattgcatcttttgattttccagATTCAGGAGGCACTGGAACGTGCAACTTTTGACAGCAGTTCTCAAGTTGGCATAATCTTTCATTCAATGGATGCACTGGAATCACCACCTACATATTTTA
                                         ttttgat  putative branch site (score: 4)
                                       tcttttgattttcc  CT-rich tract
                                         ttttgatttt  TA-rich tract