1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccctctctcaaatagaaatgggcttaagtttcaacaatcatcagagagatgctgttaggttgtttcccagggtatttatctttgttttgtttcctttcagTTTGGAGGAGAGGCAGCGTGCTGAAAAGAGAAGCCGAGAGGAGAAAGGGCATAGCTTCACACCAAGATGGTTTGATTTAACTGAAGAAGTGACACCAACT
species | Glycine max |
transcript | GLYMA11G14770.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATGCACTCGAGATGGGCGATCTGTCAAAATCTGGGGCAGAAAAGAGCAG TTTGGAGGAGAGGCAGCGTGCTGAAAAGAGAAGCCGAGAGGAGAAAGGGCAEST: gi|6914247|gb|AW395777.1|AW395777
genomic: TATGCACTCGAGATGGGCGATCTGTCAAAATCTGGGGCAGAAAAGAGCAGgttactgacc ... ttcctttcagTTTGGAGGAGAGGCAGCGTGCTGAAAAGAGAAGCCGAGAGGAGAAAGGGCA
EST: TATGCACTCGAGATGGGCGATCTGTCAAAATCTGGGGCAGAAAAGAGCAG TTTGGAGGAGAGGCAGCGTGCTGAAAAGAGAAGCCGAGAGGAGAAAGGGCA
genomic: TATGCACTCGAGATGGGCGATCTGTCAAAATCTGGGGCAGAAAAGAGCAGgttactgacc ... ttcctttcagTTTGGAGGAGAGGCAGCGTGCTGAAAAGAGAAGCCGAGAGGAGAAAGGGCA
gagatgctgttaggttgtttcccagggtatttatctttgttttgtttcctttcagTTTGGAGGAGAGGCAGCGTGCTGAAAAGAGAAGCCGAGAGGAGAAAGGGCATAGCTTCACACCAAGATGGTTTGATTTAACTGAAGAAGTGACACCAACT
tttatctttgttttgt CT-rich tract
tatttatctttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccctctctcaaatagaaatgggcttaagtttcaacaatcatcagagagatgctgttaggttgtttcccagggtatttatctttgttttgtttcctttcagTTTGGAGGAGAGGCAGCGTGCTGAAAAGAGAAGCCGAGAGGAGAAAGGGCATAGCTTCACACCAAGATGGTTTGATTTAACTGAAGAAGTGACACCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- ctctctc
- - - - - aatagaaa
- - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttccc