1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gaccacttagatgatcataattttggtctccttacctaactcacaatcacacggcagagaaatgttttacatgtgatttgatttttggggttgtgcacagGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGTGAACCTGTTCCCCAAGAACTTTTGGACAGGGTTCTAGTGGCCC
species | Glycine max |
transcript | GLYMA11G14760.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAG GATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGEST: gi|208086491|gb|GD879805.1|GD879805
genomic: AGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAGgtaaaaacct ... ttgtgcacagGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
EST: AGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAG GATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGEST: gi|298175971|gb|HO015376.1|HO015376
genomic: AGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAGgtaaaaacct ... ttgtgcacagGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
EST: AGCTTTGTGCTTTTGATAATGCAAAGCATCGGACATATGTGGATTTGAAG GATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGEST: gi|31472749|gb|CD414777.1|CD414777
genomic: AGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAGgtaaaaacct ... ttgtgcacagGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
EST: AGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAG GATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGEST: gi|51337741|gb|CO981607.1|CO981607
genomic: AGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAGgtaaaaacct ... ttgtgcacagGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
EST: AGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAG GATAAATTGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
genomic: AGCTTTGTGCTTTTGATAATGCAAATCATCGGACATATGTGGATTTGAAGgtaaaaacct ... ttgtgcacagGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGG
atcacacggcagagaaatgttttacatgtgatttgatttttggggttgtgcacagGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGTGAACCTGTTCCCCAAGAACTTTTGGACAGGGTTCTAGTGGCCC
atttgat putative branch site (score: 5)
atttgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaccacttagatgatcataattttggtctccttacctaactcacaatcacacggcagagaaatgttttacatgtgatttgatttttggggttgtgcacagGATAAATGGAAAACACTGGTGCACACGGCAAGAATATCCCCTCAGCAAAGGAGGGGTGAACCTGTTCCCCAAGAACTTTTGGACAGGGTTCTAGTGGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- ccactta
- - - - - - - - - - - - - - -ccttacc
- - - - - - - - - - - - - - - - - - -aactcac
- - - - - - - - - - - - - - - - - - - - - - -atcacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgtg