1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cactacttccttaatattcctttaccccctaaatgttatactgtttgctatacatgtgggttgatctcttgcttttggtttcttctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
species | Glycine max |
transcript | GLYMA11G14550.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAAEST: gi|193470132|gb|FK434995.1|FK434995
genomic: GTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttacaatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAA
EST: GTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAAEST: gi|207833063|gb|GD805268.1|GD805268
genomic: GTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttacaatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAA
EST: GTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAAEST: gi|21677598|gb|BQ629949.1|BQ629949
genomic: GTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttacaatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAA
EST: GTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAC CATGTGCTGGAACATGGGAAGCCTCATGAGCGTEST: gi|193624420|gb|FK573432.1|FK573432
genomic: GTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttacaatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGT
EST: GTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAAEST: gi|207778132|gb|GD748009.1|GD748009
genomic: GTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttacaatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAA
EST: TTGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAG CATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAA
genomic: -TGCAGTTAGCATGTTAGCTCAGGATCAGTATGGCAACTACGTTGTTCAGgtttacaatt ... ttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAA
tgctatacatgtgggttgatctcttgcttttggtttcttctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
ccttgat putative branch site (score: 5)
tctcttgcttttggtt CT-rich tract
ttgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactacttccttaatattcctttaccccctaaatgttatactgtttgctatacatgtgggttgatctcttgcttttggtttcttctctccttgataacagCATGTGCTGGAACATGGGAAGCCTCATGAGCGTTCTTGTATAATAAAGGAATTAGCAGGCAAGATAGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- ctacttc
- - - - - - - - - - - taccccc
- - - - - - - - - - - - - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttg