Sequence
atgc intronic sequence ATGC exonic sequencegtgagtacaagtcattctataggtttctttccccccagaagttacatatttcatttgaatgtttttcctagatgaatggtctaaattactggtttcttttctgttattattttcagGATGAATTTCCTAAGTAACATTCTTAGGGAAGAAGGTGGCTTTGATTACAAGAAAGCAGTTGTAGATTCAATTGTGATTCTTATTAGAGATATCCCTGAT
Basic information
| species | Glycine max |
| transcript | GLYMA11G12610.2 |
| intron # | 9 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G12610.2 (Glycine max), 3'ss of exon 9
lower sequence: LOC_Os07g10150.1 (Oryza sativa), 3'ss of exon 9
gtgagtacaagtcattctataggtttctttccccccagaagttacatatttcatttgaatgtttttcctagatgaatggtctaaattactggtttcttttctgttattattttcagGATGAATTTCCTAAGTAACATTCTTAGGGAAGAAGGTGGCTTTGATTACAAGAAAGCAGTTGTAGATTCAATTGTGATTCTTATTAGAGATATCCCTGAT
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----gtacgtagaatagcgtatattcttatac----agaaatt----------tttaaagatc---cagaactagcttgtc---atcagaacattgaactttgttgt-gtttgcagGATGAACTTTTTGAGTAATATCCTACGGGAAGAGGGTGGCTTTGAGTACAAGAAGGCTATTGTTGATTCAATTATCATACTCATTAGAGATATTCCTGAT
upper sequence: GLYMA11G12610.2 (Glycine max), 3'ss of exon 9
lower sequence: AT4G34450.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgagta------caagtcattctataggtttctttccccccagaagttacatatttcatttgaatgttt---ttcctagatgaatggtctaaattactggttt---------cttttctgttattattttcagGATGAATTTCCTAAGTAACATTCTTAGGGAAGAAGGTGGCTTTGATTACAAGAAAGCAGTTGTAGATTCAATTGTGATTCTTATTAGAGATATCCCTGAT
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gtaagtaaagttttagggtttgttatttgtagttttggtctcgagcatttc-tatttt-tttgaatgattaaatatgttatggtatctttttagcatttggcttatgattgatctatcaccttttcatttgtagGATGACCTTCTTAAGCAACATTCTTAGGGAAGAAGGTGGATTTGAGTATAAAAGAGCAATAGTAGATTCTATTGTGACCATTATCAGAGATATTCCGGAT
upper sequence: GLYMA11G12610.2 (Glycine max), 3'ss of exon 9
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 9
gtgagtacaagtcattctataggtttctttccccccagaagttacatatttcatttgaatgtttttcctagatgaatggtctaaattactggtttc------------------ttttctgttattattttcagGATGAATTTCCTAAGTAACATTCTTAGGGAAGAAGGTGGCTTTGATTACAAGAAAGCAGTTGTAGATTCAATTGTGATTCTTATTAGAGATATCCCTGAT
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----gtaagtgatatcctgtttttgatgtcatcattaaaacatttgggttttatttttatgtcttttttaaatgaacagtgtaaaatgtttccgtcatgtgaaatagaataaccctttttcccttgcttttcagGATGAACTTCTTAAGCAACATTCTTAGGGAAGAAGGTGGATTTGAGTACAAAAAGGCGATTGTTGATTCAATCGTGATCCTCATAAGAGATATTCCTGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193488081|gb|FK453174.1|FK453174EST: GAAGCAATAAGATCATTGTGCTTGAAATTCCCTTTAAAATATAGATCTCT GATGTATTTCCTAAGTAACATTCTTAGGGAAGAAGGTGGCTTTGATTACAA
genomic: GAAGCAATAAGATCATTGTGCTTGAAATTCCCTTTAAAATATAGATCTCTgtgagtacaa ... ttattttcagGATGAATTTCCTAAGTAACATTCTTAGGGAAGAAGGTGGCTTTGATTACAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttttcctagatgaatggtctaaattactggtttcttttctgttattattttcagGATGAATTTCCTAAGTAACATTCTTAGGGAAGAAGGTGGCTTTGATTACAAGAAAGCAGTTGTAGATTCAATTGTGATTCTTATTAGAGATATCCCTGAT
gtctaaa putative branch site (score: 3)
tttcttttctgttatt putative PPT
tttcttttctgttatt TA-rich tract
