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gtaagatgttgtatggcttgttatcgcttgaactgggtggagggctgatttgattcctttgtacctcttcaatgtccttttttcattgtgtgatttaattgactgtgccacttctttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGATATAGCTTCTCCAAAAGCGATGAAGAGCTACTCACACCTGAGGTTGACAC
species | Glycine max |
transcript | GLYMA11G12260.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATG GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGATEST: gi|18040573|gb|BM308867.1|BM308867
genomic: TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGAT
EST: TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATG GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGATEST: gi|193616977|gb|FK569295.1|FK569295
genomic: TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGAT
EST: TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATG GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGATEST: gi|11687620|gb|BF595296.1|BF595296
genomic: TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGAT
EST: GGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATG GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGATEST: gi|193332427|gb|FK301601.1|FK301601
genomic: GGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGAT
EST: TATTGCCTATGTCCAGACCACAATATCCAATG GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGATEST: gi|15813836|gb|BI786111.1|BI786111
genomic: TATTGCCTATG-CCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGAT
EST: TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATG GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGATEST: gi|298172194|gb|HO021786.1|HO021786
genomic: TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGAT
EST: TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATG GTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGAT
genomic: TAAATAGTGAAGGAAAGGTTATTGCCTATGCCAGACCACAATATCCAATGgtaagatgtt ... tttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGAT
caatgtccttttttcattgtgtgatttaattgactgtgccacttctttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGATATAGCTTCTCCAAAAGCGATGAAGAGCTACTCACACCTGAGGTTGACAC
aattgac putative branch site (score: 3)
tgccacttctttctt putative PPT
ttttttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgttgtatggcttgttatcgcttgaactgggtggagggctgatttgattcctttgtacctcttcaatgtccttttttcattgtgtgatttaattgactgtgccacttctttcttgcagGTAAAAGGCAGTGACACATCCACAGCTGAATCAGGGTCGGAAGCTGAAGATATAGCTTCTCCAAAAGCGATGAAGAGCTACTCACACCTGAGGTTGACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT