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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttattgttattctgatcctttattttataatgagttttcattttgcctaaccagagttaataccttgggagggttttgtaaaattgatttaatggaacgtgttacctcgaattttcagATCCAGGAAGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAATGCCATTTTCCAAGTTTTGCAAACTAGGGAGTTGCCACCTACCTATTTCC

Basic information

species Glycine max
transcript GLYMA11G12120.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193411199|gb|FK376822.1|FK376822
EST:     CTGAGGGGTAGGAAGTTCCTTGTTTTTGCAACTAAGCAG                         ATCCAGGAAGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAAT
genomic: CTGAGGGGT-GG-AG-TCC-TGTTTTTGCAACTAAGCAGgtatttattg ... gaattttcagATCCAGGAAGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAAT
EST: gi|193549644|gb|FK506401.1|FK506401
EST:     TGTCTTGTGGCTNAGGGGTGGAGTCCNGTTTTTGCAACTAAGCAG                         ATCCAGGAAGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAAT
genomic: TGTCTTGTGGCTGAGGGGTGGAGTCCTGTTTTTGCAACTAAGCAGgtatttattg ... gaattttcagATCCAGGAAGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgggagggttttgtaaaattgatttaatggaacgtgttacctcgaattttcagATCCAGGAAGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAATGCCATTTTCCAAGTTTTGCAAACTAGGGAGTTGCCACCTACCTATTTCC
                       atttaat  putative branch site (score: 4)
                                                ttttc  putative PPT
          ttttgtaaaattgatt  TA-rich tract