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gtattttggttatgccatagaaagtccttataattctatgtttcataaatttagactgacaatattcatgatctaaataatgatacagATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGA
species | Glycine max |
transcript | GLYMA11G10770.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG ATATGGTGGTGGTATGAAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACEST: gi|15287567|gb|BI471458.1|BI471458
genomic: G-ATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGA-GTTCTGCCAAAGCTGCACTGGAGAGTGATACAC
EST: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG ATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGEST: gi|12773652|gb|BG238579.1|BG238579
genomic: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACG
EST: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG ATATGGTGGTGGTATGAGTTCTGCCANNAGCTGCACTGGAGAGTGATACACEST: gi|209721948|gb|BW680083.1|BW680083
genomic: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCCAA-AGCTGCACTGGAGAGTGATACAC
EST: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG ATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGEST: gi|9899327|gb|BE608295.1|BE608295
genomic: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACG
EST: GATCCTTCA-TCTCTCTGACATACATTGCTTCAGAAAGGATCATTTCTGG ATATGGTGGTGGGATGAEST: gi|7030180|gb|AW459963.1|AW459963
genomic: GATC-TTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGA
EST: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGG ATATGGTGGTGGTATGAGTTCTGCCGAAGCTGCACTGGAGAGTGATACACG
genomic: GGATCTTCAATCTCTCTGACATACATTGCTTCAGAAAGGATCATTCCTGGgtattttggt ... aatgatacagATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACG
ttctatgtttcataaatttagactgacaatattcatgatctaaataatgatacagATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGA
aatattcatgatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttggttatgccatagaaagtccttataattctatgtttcataaatttagactgacaatattcatgatctaaataatgatacagATATGGTGGTGGTATGAGTTCTGCCAAAGCTGCACTGGAGAGTGATACACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA