1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttttatgtgtctcatattacatccctgtgaattctgctttaggaggccttttttaggaataattaggttgttttgacaacttagagaaaaactgatgtagGTGGCAAGGCATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAGCCCGTTGGTACTACAGCTTATATGGCTCGAGTGGAACAACTGATGCAAT
species | Glycine max |
transcript | GLYMA11G03800.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATGTTCCTGCCTGCACGTATGAAGGAGACAATGTTGTGCTTCTGTTACAG GTGGCAAGGCATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAGEST: gi|13479972|gb|BG509315.1|BG509315
genomic: ATGTTCCTGCCTGCACGTATGAAGGAGACAATGTTGTGCTTCTGTTACAGgtttgttaaa ... actgatgtagGTGGCAAGGCATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAG
EST: ATGTTCCTGCCTGCACGTATGAAGGAGACAATGTTGTGCTTCTGTTACAG GTGGCAAGGCATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAGEST: gi|15288243|gb|BI472134.1|BI472134
genomic: ATGTTCCTGCCTGCACGTATGAAGGAGACAATGTTGTGCTTCTGTTACAGgtttgttaaa ... actgatgtagGTGGCAAGGCATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAG
EST: ATGTTCCTGCCTGCACGTATGAAGGAGACAATGTTGTGCTTCTGTTACAG GTGGCAAGGCATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAG
genomic: ATGTTCCTGCCTGCACGTATGAAGGAGACAATGTTGTGCTTCTGTTACAGgtttgttaaa ... actgatgtagGTGGCAAGGCATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAG
gccttttttaggaataattaggttgttttgacaacttagagaaaaactgatgtagGTGGCAAGGCATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAGCCCGTTGGTACTACAGCTTATATGGCTCGAGTGGAACAACTGATGCAAT
aactgat putative branch site (score: 3)
ttttaggaataatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttatgtgtctcatattacatccctgtgaattctgctttaggaggccttttttaggaataattaggttgttttgacaacttagagaaaaactgatgtagGTGGCAAGGCATCTCATGAAGACTGTTTCTCAGCTGGGCTCTGGAAATAAGCCCGTTGGTACTACAGCTTATATGGCTCGAGTGGAACAACTGATGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA